A muslim killing their daughter due to "honor killing" is an infringment upon the daughter's rights. Not forcing a chuch organization to pay for something for another individual does not infinge upon any rights. In fact, forcing a church organization to pay for something against their teachings violates the rights of the church.
The laws and the courts have disagreed with you. You are free to your own opinion, but frankly, your opinion has been proven wrong through many legal challenges.And if that's the case, then that includes the degree that when a religious organization acts as a business it can be overseen as a business despite the conscience of those who run that business.